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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17252309_17252395_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17252309 - 17252395
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
TGTCCTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
CCCCACTTACTA
Flanking Amino Acid:
YIYPCPVDTMKERLVKGTAA
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.7
38.7
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
77.7
0.62
0.8
70
36.5
Minor 5ss
38.3
-1.3
3.1
45
44.5
Minor BPS
45.4
-0.3
1.8
48.87
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016418
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017155
17249442 - 17270914
21473
ENSAPLT00000020487
17249442 - 17270914
21473