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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17252545_17252785_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17252545 - 17252785
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TGTCTCTTGACA
Flanking Amino Acid:
EPTGVAVMEARQQLTLLEVR
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
76.1
0.59
1
72.3
37.9
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
71.6
0.67
1.2
76.56
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016418
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020487
17249442 - 17270914
21473
ENSAPLT00000017155
17249442 - 17270914
21473