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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17253201_17253289_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17253201 - 17253289
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
AACCTACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTCTAACCT
Flanking Amino Acid:
WRQVSDKPRYRRWLLSAVSA
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
70.7
0.47
0.9
62.7
37.7
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
64.1
0.52
1.9
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016418
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020487
17249442 - 17270914
21473
ENSAPLT00000017155
17249442 - 17270914
21473