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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17255338_17255498_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17255338 - 17255498
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
SKSRLPYMYNISSACNIALK
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.9
84.8
35.6
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016418
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017155
17249442 - 17270914
21473
ENSAPLT00000020487
17249442 - 17270914
21473