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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17257541_17259110_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17257541 - 17259110
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TTGTTGGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCATTTTTAAAT
Flanking Amino Acid:
TTALARAAANVDGKMTPPLT
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
1
72.9
42.2
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
60.5
0.41
1.4
68.96
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016418
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020487
17249442 - 17270914
21473
ENSAPLT00000017155
17249442 - 17270914
21473