Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17259205_17259317_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17259205 - 17259317

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGTAG

5'SS Class:

major

3'SS Sequence:

TGCTCTGTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACACAT

U12 Branch Point Sequence:

CTGTCTTACACA

Flanking Amino Acid:

TMQIRSDINPSLYVHTVATM

Intron Amino Acid Position:

845

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

66.6

41.6

Major BPS

69.9

0.49

75.2

29.8

Major PPT

79.3

0.66

0.9

76.4

37.7

Minor 5ss

34.7

-1.7

3.5

45.4

49.7

Minor BPS

48.4

-0.1

2.1

62.04

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020487

17249442 - 17270914

21473

ENSAPLT00000017155

17249442 - 17270914

21473