Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17260717_17261085_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17260717 - 17261085

Intron Length:

369

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

AACTGTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAA

U12 Branch Point Sequence:

TCCCTTTGAACT

Flanking Amino Acid:

KILGIDNVFKVANKTRHQKK

Intron Amino Acid Position:

1089

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

74.8

0.62

39.8

Major PPT

73.2

0.52

0.9

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

56.4

0.28

1.4

69.31

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020487

17249442 - 17270914

21473

ENSAPLT00000017155

17249442 - 17270914

21473