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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17274833_17275352_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17274833 - 17275352
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CACAACAAAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
GTTCCCGTGAGT
Flanking Amino Acid:
LILALVLALVGISVFYYLIE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
74
0.6
1
65.6
41.1
Major PPT
40.8
-0.5
1.6
33.7
33.8
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
48.6
-0
2.3
73.55
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568