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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17277363_17277525_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17277363 - 17277525
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
AATCAACACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTGTGTTTAATC
Flanking Amino Acid:
KSQNVYELQEAGIEGICQTR
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
56.8
0.15
1
48
38.6
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
64.9
0.45
1.7
73.46
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568