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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17277688_17277801_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17277688 - 17277801
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGACCA
5'SS Class:
major
3'SS Sequence:
TTTGCAACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTCTTTGCAACT
Flanking Amino Acid:
YIRPCPTCPLKVRNVKGTVM
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
58
41.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
71.8
0.49
0.9
68.4
37.5
Minor 5ss
31
-2.2
3.3
36.7
41.5
Minor BPS
46.6
-0.1
2.2
66.64
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568