Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17278599_17278679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17278599 - 17278679

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGTA

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTAAT

U12 Branch Point Sequence:

ATGGGGGTAATT

Flanking Amino Acid:

WEQFASEPPYRHWFLSAVCA

Intron Amino Acid Position:

364

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

1.1

81.5

32.7

Major BPS

51.5

0.04

1.5

55.4

48.1

Major PPT

0.36

0.9

61.3

29.1

Minor 5ss

41.8

-0.9

3.2

58.1

46.5

Minor BPS

37.3

-0.8

2.7

57.03

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028497

17274793 - 17296360

21568