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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17279479_17280298_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17279479 - 17280298
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GATGTGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
ACATGATTAACC
Flanking Amino Acid:
PSFCPNELLQPLHDLAAEAA
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
74.2
0.55
1
69.5
45.7
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
51.2
0.02
2
62.86
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568