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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17280518_17280928_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17280518 - 17280928
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAACTGAA
5'SS Class:
major
3'SS Sequence:
CTTCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGGTATTCACAT
Flanking Amino Acid:
RKIARKDPAKVREISLQIFM
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
71.3
34.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.1
0.79
0.7
76.7
31.9
Minor 5ss
39.3
-1.2
3.2
48.7
41.9
Minor BPS
42.8
-0.4
1.9
59.16
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568