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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17281147_17281261_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17281147 - 17281261
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTATTACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATGATTTTAACT
Flanking Amino Acid:
AVGRIPQLYNLSAACNIAIK
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.5
0.64
0.9
77.2
35.7
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
68.9
0.67
1.2
78.4
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568