Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17281360_17281790_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17281360 - 17281790

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGAGTACC

5'SS Class:

major

3'SS Sequence:

GTTCCTGTTATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAGAAA

U12 Branch Point Sequence:

GTTCCTGTTATA

Flanking Amino Acid:

SKVIHAGGYSHVYKAGAIWR

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.3

66.2

39.6

Major BPS

48.4

-0.1

1.4

56.3

37.2

Major PPT

74.6

0.55

0.9

68.6

37.3

Minor 5ss

33.4

-1.9

2.7

42.8

36.9

Minor BPS

45.6

-0.3

2.2

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028497

17274793 - 17296360

21568