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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17281916_17282555_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17281916 - 17282555
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TGTTTCCTACAG
Flanking Amino Acid:
YANTATDIIEVALRSQSLIN
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
82.5
0.73
0.8
76.6
32.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
46.5
-0.4
2.1
57.81
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568