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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17282658_17283274_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17282658 - 17283274
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTCTT
5'SS Class:
major
3'SS Sequence:
CTTAACACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TCCTCCTTAACA
Flanking Amino Acid:
YKTLKELGKTFLGWKELPPE
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
73.2
43.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
71.2
0.48
0.9
63.3
37.7
Minor 5ss
39.6
-1.2
3.3
59.4
45
Minor BPS
84.2
1.07
1.1
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568