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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17285414_17286268_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17285414 - 17286268
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGAGG
5'SS Class:
major
3'SS Sequence:
CAAGGGATACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGATATTCAAGG
Flanking Amino Acid:
EISSRAESWKQASEEEHRHS
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64.3
47.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
49.3
-0
1.1
36.9
43.5
Minor 5ss
37.2
-1.4
3.1
48.8
47
Minor BPS
44.8
-0.5
2
50.32
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568