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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17286459_17286546_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17286459 - 17286546
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
ATCTTGACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AGTATCTTGACT
Flanking Amino Acid:
ELEAKIVLKPVHTDADIEKI
Intron Amino Acid Position:
1010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
68.9
0.42
0.9
59.8
41.1
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
68.4
0.66
1.3
78.78
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568