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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17288471_17288561_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17288471 - 17288561
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TTCTCTTCTACT
Flanking Amino Acid:
ASVINSHKASGSLKWGTDCQ
Intron Amino Acid Position:
1261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
75.9
0.58
0.8
70.6
34.8
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
59.3
0.37
1.9
80.15
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568