About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17290275_17290991_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17290275 - 17290991
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GACTCATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTTTCTGACT
Flanking Amino Acid:
TCDVVLRLPELTIYNRAIRL
Intron Amino Acid Position:
1355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.3
0.55
0.9
69.8
40.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
60.4
0.41
1.6
80.04
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568