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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17294065_17294165_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17294065 - 17294165
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TATTTCCATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCCATAAAG
Flanking Amino Acid:
KLYYDGHRFEIRVAFWMAGK
Intron Amino Acid Position:
1526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.3
0.41
1.1
68.7
36.4
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
64.4
0.32
1.8
72.67
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568