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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17294326_17295441_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17294326 - 17295441
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
WIVSEDACAGACKLQRRFVK
Intron Amino Acid Position:
1579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
38.2
-1.3
3.1
50
46.2
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021250
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028497
17274793 - 17296360
21568