Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17296924_17297180_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17296924 - 17297180

Intron Length:

257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGGCGAG

5'SS Class:

major

3'SS Sequence:

TTCCTGCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

GGGTTGGGAACT

Flanking Amino Acid:

QPVAGTGGPEVFVFDVGKKA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.3

55.3

43.9

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

74.4

0.55

0.8

66.1

35.9

Minor 5ss

30.6

-2.2

3.4

37.6

47.3

Minor BPS

39.6

-0.7

2.5

57.66

44.9

Associated Gene:

Gene:

CTBS

Ensembl Gene ID:

ENSAPLG00000016415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017131

17296242 - 17303545

7304