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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17297936_17298340_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17297936 - 17298340
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
ACCTCTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GACTCTTGAACA
Flanking Amino Acid:
MWRTTKVKCKSDVPLKEIVD
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
69.7
0.44
0.9
62.3
38.3
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
62.5
0.39
1.4
66.28
39.9

Associated Gene:

Gene:
CTBS
Ensembl Gene ID:
ENSAPLG00000016415
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025157
17297852 - 17303545
5694