About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17300550_17301261_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17300550 - 17301261
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
AACTCCTGCACT
Flanking Amino Acid:
YDYVCLNLSEDHVCSLSKIP
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
54.7
0.23
2
72.62
43.8

Associated Gene:

Gene:
CTBS
Ensembl Gene ID:
ENSAPLG00000016415
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025157
17297852 - 17303545
5694
ENSAPLT00000017131
17296242 - 17303545
7304