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Intron Name: Anas_platyrhynchos_platyrhynchos_8_17308876_17309734_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17308876 - 17309734

Intron Length:

859

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

ATAATATCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATAAATATAATT

Flanking Amino Acid:

PAQVPAFQAEKNKMVEQLEQ

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

84.6

33.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

67.8

0.4

64.2

Minor 5ss

41.1

-1

2.8

51.8

38.9

Minor BPS

47.9

-0

1.7

66.25

Associated Gene:

Gene:

SPATA1

Ensembl Gene ID:

ENSAPLG00000016401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040212

17302090 - 17321490

19401

ENSAPLT00000017117

17298374 - 17321490

23117