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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17314540_17316572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17314540 - 17316572
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATCT
Flanking Amino Acid:
LKCIGKKLAVVKAKQETELE
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
74.7
0.56
1
79.4
32.8
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
74.4
0.84
1.5
88.63
36.3

Associated Gene:

Gene:
SPATA1
Ensembl Gene ID:
ENSAPLG00000016401
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040212
17302090 - 17321490
19401
ENSAPLT00000017117
17298374 - 17321490
23117