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Intron Name: Anas_platyrhynchos_platyrhynchos_8_17316691_17320596_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17316691 - 17320596

Intron Length:

3906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

AACAACATTCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATTAATGAATA

Flanking Amino Acid:

TRKFISAGFIRVSPHITLRA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.7

1.05

0.6

92.2

16.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

56.5

0.15

44.8

41.1

Minor 5ss

33.9

-1.8

2.8

41.8

44.8

Minor BPS

51.3

0.04

1.9

68.31

37.3

Associated Gene:

Gene:

SPATA1

Ensembl Gene ID:

ENSAPLG00000016401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040212

17302090 - 17321490

19401

ENSAPLT00000017117

17298374 - 17321490

23117