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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17327711_17328499_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17327711 - 17328499
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
KFGEYEWVHKRREMDTSRRK
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
RPF1
Ensembl Gene ID:
ENSAPLG00000016382
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017102
17327669 - 17333113
5445