Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17328627_17328705_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17328627 - 17328705

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACATTT

5'SS Class:

major

3'SS Sequence:

TCTTTCTCTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TATAACTCAGCA

Flanking Amino Acid:

QRDYIFFRFHRYIFKSEKKV

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.1

77.6

33.4

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

77.1

0.61

75.8

33.2

Minor 5ss

-0.7

3.2

64.8

46.5

Minor BPS

47.6

-0.1

63.47

41.9

Associated Gene:

Gene:

RPF1

Ensembl Gene ID:

ENSAPLG00000016382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017102

17327669 - 17333113

5445