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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17329835_17330390_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
17329835 - 17330390
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTCTATGAACAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAACT
Flanking Amino Acid:
IVINEDRKIPNGLVLSHLPD
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
65.1
41.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
63.5
0.31
1.1
58.6
40.5
Minor 5ss
95.8
1.54
0.7
90.3
20.6
Minor BPS
94.2
1.47
0.6
103.6
17.6

Associated Gene:

Gene:
RPF1
Ensembl Gene ID:
ENSAPLG00000016382
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017102
17327669 - 17333113
5445