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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17331535_17331931_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17331535 - 17331931
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTACAAGACT
Flanking Amino Acid:
ETTVDPNDEEVAFDEATDEF
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.1
0.81
0.8
80.7
31.1
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
48.4
-0
2.1
75.73
40.6

Associated Gene:

Gene:
RPF1
Ensembl Gene ID:
ENSAPLG00000016382
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017102
17327669 - 17333113
5445