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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17332013_17332793_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17332013 - 17332793
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTTACATTAATA
Flanking Amino Acid:
RKEREALGDKAPPKAVPKTI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
73.4
0.53
0.9
71
38.8
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
65.4
0.48
1.6
74.56
36.5

Associated Gene:

Gene:
RPF1
Ensembl Gene ID:
ENSAPLG00000016382
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017102
17327669 - 17333113
5445