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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17346836_17364621_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17346836 - 17364621
Intron Length:
17786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTTCATGACT
Flanking Amino Acid:
MSQVTIKDIEVLNCE
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
66.8
0.61
1.6
83.64
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017054
17346821 - 17372220
25400