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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17353299_17353583_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17353299 - 17353583
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTTCA
5'SS Class:
major
3'SS Sequence:
TCTCTCTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TCTCTCTGCACA
Flanking Amino Acid:
NRAVEQAWRSVMPQQNMLLS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66.4
35.3
Major BPS
61.1
0.28
1
67
29.8
Major PPT
76.1
0.59
0.9
71.5
32.9
Minor 5ss
33.8
-1.8
3
37.8
42.2
Minor BPS
49.4
-0
1.9
65.1
41.3

Associated Gene:

Gene:
DNASE2B
Ensembl Gene ID:
ENSAPLG00000026479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021639
17352859 - 17362983
10125