About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17364841_17365573_F

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
17364841 - 17365573
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATCTTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTTGCTGCCTTAG|A
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTCTAATAATA
Flanking Amino Acid:
IVLVLAKKNGIPTLEQFAID
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
71.4
41.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.8
0.49
0.9
70
36.5
Minor 5ss
75.6
0.86
1.7
75.5
40.6
Minor BPS
48.9
-0
1.8
65.36
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017054
17346821 - 17372220
25400