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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17365889_17368309_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17365889 - 17368309
Intron Length:
2421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTGGTTCACA
Flanking Amino Acid:
RFCEAEQCRNGPLVVFAGIK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.7
0.71
0.9
75.8
38.1
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
48.2
-0.1
2.7
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017054
17346821 - 17372220
25400