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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17368497_17368963_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17368497 - 17368963
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATGTC
5'SS Class:
major
3'SS Sequence:
GTGTTACCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAA
U12 Branch Point Sequence:
TTTGTAAGAACC
Flanking Amino Acid:
ECRDFDFDCIWNKVRECILE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
67.4
36.1
Major BPS
62.3
0.31
1.4
63.7
43.9
Major PPT
69.3
0.43
0.9
60
41.8
Minor 5ss
42.8
-0.8
3.2
57.4
42.8
Minor BPS
46.1
-0.3
2
65.19
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017054
17346821 - 17372220
25400