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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17369588_17370453_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17369588 - 17370453
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTACTCATTC
Flanking Amino Acid:
KNLGLTNDKEVLVPVETPYG
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
79.1
0.65
0.8
77.2
31.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
48.4
-0.1
2
63.44
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017054
17346821 - 17372220
25400