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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17380397_17383708_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17380397 - 17383708
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCGCCTTTA
5'SS Class:
weak_major
3'SS Sequence:
GTAAATCTGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTCCAAGAACA
Flanking Amino Acid:
KPFSCPRVGAETPWHSGDLL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.4
53.4
42.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
55.7
0.13
1.1
47.6
45.4
Minor 5ss
33
-1.9
4.1
48.5
47.7
Minor BPS
50
-0
2
72.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032400
17380178 - 17383858
3681