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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17400848_17402817_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17400848 - 17402817
Intron Length:
1970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCACAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
TDWIAIYQRKVEAPFIPKCR
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
66.6
0.37
1
59.2
39.9
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016236
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035636
17400722 - 17426247
25526
ENSAPLT00000034568
17400722 - 17433052
32331
ENSAPLT00000016948
17400722 - 17433052
32331