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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17402983_17404951_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17402983 - 17404951
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATATTAATG
Flanking Amino Acid:
QIYEKIVSGKVRFPSHFSSD
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.9
0.47
1
67.7
42.6
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
55.4
0.03
1.7
61.86
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016236
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035636
17400722 - 17426247
25526
ENSAPLT00000034568
17400722 - 17433052
32331
ENSAPLT00000016948
17400722 - 17433052
32331