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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17406437_17408595_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17406437 - 17408595
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
ATTCTGCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATTTTAAAT
Flanking Amino Acid:
LLIDQQGYIQVTDFGFAKRV
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.4
0.48
1
63.4
42.3
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
65
0.55
1.4
78.52
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016236
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035636
17400722 - 17426247
25526
ENSAPLT00000034568
17400722 - 17433052
32331
ENSAPLT00000016948
17400722 - 17433052
32331