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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17408723_17409286_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17408723 - 17409286
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTCTTTTAATT
Flanking Amino Acid:
FSHLRRIGRFSEPHARFYAA
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
0.9
72.7
37
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
72.8
0.79
1.1
83.14
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016236
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034568
17400722 - 17433052
32331
ENSAPLT00000016948
17400722 - 17433052
32331
ENSAPLT00000035636
17400722 - 17426247
25526