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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17414340_17415276_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17414340 - 17415276
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAATC
5'SS Class:
major
3'SS Sequence:
CTTGTATATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGTAAATAATA
Flanking Amino Acid:
FLRKWESPPQNTAGLDDFER
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
71.6
38.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
71.8
0.49
0.9
66.9
38.6
Minor 5ss
49.7
-0
2.6
69.5
41
Minor BPS
48.6
-0.1
2
66.75
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016236
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035636
17400722 - 17426247
25526
ENSAPLT00000034568
17400722 - 17433052
32331
ENSAPLT00000016948
17400722 - 17433052
32331