Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17415339_17432868_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17415339 - 17432868

Intron Length:

17530

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTGTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

CTCTCATTAATG

Flanking Amino Acid:

SELAVLWDKSMKEFLAKAKE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

75.5

40.6

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

80.5

0.69

0.9

76.9

42.1

Minor 5ss

36.8

-1.5

2.7

42.8

38.2

Minor BPS

61.9

0.24

1.7

64.07

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016236

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034568

17400722 - 17433052

32331

ENSAPLT00000016948

17400722 - 17433052

32331