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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17509722_17511424_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17509722 - 17511424
Intron Length:
1703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAAGC
5'SS Class:
major
3'SS Sequence:
AATTTCTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AATTCCTTAAGT
Flanking Amino Acid:
ANVAGTKYEIVRVVIREMGF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
62.5
42.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
76.7
0.6
0.8
71.2
34.8
Minor 5ss
32.6
-2
3.2
40
40.9
Minor BPS
77.1
0.93
1.5
87.87
37

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016777
17506359 - 17558296
51938
ENSAPLT00000041457
17506065 - 17557213
51149
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340