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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17520527_17521331_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17520527 - 17521331
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGATAA
5'SS Class:
major
3'SS Sequence:
AACATCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAAAA
Flanking Amino Acid:
DVSKFWNDISELVVKTLIVA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68
33.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67.5
0.39
0.9
58.5
37.4
Minor 5ss
39.4
-1.2
3.1
52.9
44.9
Minor BPS
70.4
0.64
1.5
81.5
33

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041457
17506065 - 17557213
51149
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340
ENSAPLT00000016777
17506359 - 17558296
51938