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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17532322_17535626_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17532322 - 17535626
Intron Length:
3305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTCCCAACA
Flanking Amino Acid:
EHENRHMGNYRRIYPPDDKT
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.5
32.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.3
0.73
0.8
78.5
28.8
Minor 5ss
41.8
-0.9
3.2
58.1
46.5
Minor BPS
62.5
0.39
1.9
80.29
35.2

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016777
17506359 - 17558296
51938
ENSAPLT00000041457
17506065 - 17557213
51149
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340